BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012E04LP1|AL426374
(798 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1120 614 e-175
3x_Contig1651 151 2e-36
3x_Contig1717 133 5e-31
3x_Contig869 127 3e-29
3x_Contig278 111 2e-24
>3x_Contig1120
Length = 3902
Score = 614 bits (309), Expect = e-175
Identities = 313/315 (99%)
Strand = Plus / Minus
Query: 484 taagatattatgtcattagttttaactgcacaaagtccagtcgtacttgaaagagaagtc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3902 taagatattatgtcattagttttaactgcacaaagtccagtcgtacttgaaagagaagtc 3843
Query: 544 cttatctattgaattacattcgtaacaatcgatgctttctatgactctaagttccatttc 603
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3842 cttatctattgaattacattcgttacaatcgatgctttctatgactctaagttccatttc 3783
Query: 604 tctcatcgtaactggatctcctatggaaccctttacgttagcagagagtcgtttggtgat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3782 tctcatcgtaactggatctcctatggaaccctttacgttagcagagagtcgtttggtgat 3723
Query: 664 ctctaagaccctatgaatgacgttgagaacaacattggttttctcgtggaaaaggctaat 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3722 ctctaagaccctatgaatgacgttgagaacaacattggttttctcgtggaaaaggctaat 3663
Query: 724 atttttagattcgaacatgtwatacaactgatgtagtagcattgcactgaacatatctcc 783
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3662 atttttagattcgaacatgtaatacaactgatgtagtagcattgcactgaacatatctcc 3603
Query: 784 aactccggtgaaata 798
|||||||||||||||
Sbjct: 3602 aactccggtgaaata 3588
>3x_Contig1651
Length = 13087
Score = 151 bits (76), Expect = 2e-36
Identities = 85/88 (96%)
Strand = Plus / Plus
Query: 79 taaaaaattaggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtga 138
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12956 taaaaaaagaggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtga 13015
Query: 139 taaccactacactataggaccgaaattc 166
||||||||||||||||| ||||||||||
Sbjct: 13016 taaccactacactatagaaccgaaattc 13043
>3x_Contig1717
Length = 18389
Score = 133 bits (67), Expect = 5e-31
Identities = 73/75 (97%)
Strand = Plus / Minus
Query: 80 aaaaaattaggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgat 139
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1775 aaaaaagtaggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgat 1716
Query: 140 aaccactacactata 154
|||||||||||||||
Sbjct: 1715 aaccactacactata 1701
>3x_Contig869
Length = 2873
Score = 127 bits (64), Expect = 3e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 87 taggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccact 146
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 taggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgataaccact 1063
Query: 147 acactata 154
||||||||
Sbjct: 1064 acactata 1071
>3x_Contig278
Length = 1114
Score = 111 bits (56), Expect = 2e-24
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 80 aaaaaattaggtcctacccggattcgaaccggggttgttcggatcaaaaccgaaagtgat 139
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 aaaaaagtaggtcgtacccggattcgaaccggggttgttcggatcaaaaccgaaagtgat 1044
Query: 140 aacc 143
||||
Sbjct: 1045 aacc 1048
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5043
Number of Sequences: 1807
Number of extensions: 5043
Number of successful extensions: 22
Number of sequences better than 1.0e-20: 5
length of query: 798
length of database: 10,358,551
effective HSP length: 16
effective length of query: 782
effective length of database: 10,329,639
effective search space: 8077777698
effective search space used: 8077777698
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)